University of Edinburgh, Old College

Conference programme

CMSB 2007 Programme
Wednesday 19th September 2007
18:00-20:00 Joint reception with QEST in the Fellows Library of the Royal College of Surgeons
Thursday 20th September 2007
8:30-9:00 Registration
9:00-10:00 Invited speaker: Daniel T. Gillespie.
Stochastic Chemical Kinetics.
10:00-10:45 Coffee
10:45-11:15 Raya Khanin and Des Higham.
Chemical Master Equation and Langevin Regimes for a Gene Transcription Model
11:15-11:45 Werner Sandmann.
Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models
11:45-12:15 Federica Ciocchetta, Jane Hillston, Martin Kos and David Tollervey.
Modelling Yeast pre-rRNA Processing
12:15:13:30 Lunch
13:30-14:00 François Fages and Aurélien Rizk.
On the Analysis of Numerical Data Time Series in Temporal Logic
14:00-14:30 Heike Siebert and Alexander Bockmayr.
Context Sensitivity in Logical Modelling with Time Delays
14:30-15:15 Tea
15:15-15:45 Cristian Versari and Nadia Busi.
Stochastic Simulation of Biological Systems with Dynamical Compartment Structure
15:45-16:15 Martyn Brown, Paul Rees, Steve Wilks, Huw D. Summers, Rachel J. Errington, Kerenza L. Njoh, Sally C. Chappell, Paul J. Smith and James F. Leary.
Computational Simulation of Optical Tracking of Cell Populations using Quantum Dot Fluorophores
16:15-16:45 Lorenzo Dematté, Corrado Priami, Alessandro Romanel and Orkun Soyer.
A Formal and Integrated Framework to Simulate Evolution of Biological Pathways
16:45-17:00 Short break
17:00-18:00 Public lecture: Vincent Danos.
Rule-based Modeling of Cellular Signalling.
19:30 Conference Dinner
Friday 21st September 2007
9:00-10:00 Invited speaker: Mark Girolami.
The Convergence of Mechanistic and Statistical Modelling within Systems Biology.
10:00-10:45 Coffee
10:45-11:15 Bartek Wilczynski and Jerzy Tiuryn.
Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray Data using Stochastic Logical Networks
11:15-11:45 Maria Luisa Guerriero, John Heath and Corrado Priami.
An Automated Translation from a Narrative Language for Biological Modelling into Process Algebra
11:45-12:15 Andrea Bracciali, Marcello Brunelli, Enrico Cataldo and Pierpaolo Degano.
Expressive Models for Synaptic Plasticity
12:15:13:30 Lunch
13:30-14:00 Alberto Credi, Marco Garavelli, Cosimo Laneve, Sylvain Pradalier, Serena Silvi and Gianluigi Zavattaro.
Modelization and Simulation of Nano Devices in nanok Calculus
14:00-14:30 Andrew Phillips and Luca Cardelli.
Efficient, Correct Simulation of Biological Processes in the Stochastic pi-calculus
14:30-15:15 Tea
15:15-15:45 David Gilbert, Monika Heiner and Sebastian Lehrack.
A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets
15:45-16:15 Liliana Félix, Francesc Rosselló and Gabriel Valiente.
Reconstructing Metabolic Pathways by Bidirectional Chemical Search
16:15-16:45 Aurélien Naldi, Denis Thieffry and Claudine Chaouiya.
Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks
16:45 Close
CMSB conference news

CMSB 2008 will be held in Rostock, Germany.

The conference is scheduled to take place 12th-15th October. Please send your best paper to CMSB 2008.

Abstract submission deadline: 05/05/2008 at 23:55.
Paper submission deadline: 12/05/2008 at 23:55.

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